Abstract:Objective To investigate the characteristics of microbial diversity in the tonsil and adenoid tissues of children with sleep-disordered breathing. Methods ?? This study enrolled three pediatric patients diagnosed with SDB via polysomnography (PSG) between August 2024 and September 2024. All patients underwent tonsillectomy and adenoidectomy at the Department of Otolaryngology, Jingzhou Central Hospital. Tonsil and adenoid tissues from the same patient were collected during surgery and subjected to metagenomic sequencing. The Shannon diversity index curve, relative abundance, and microbial distribution in the tonsil and adenoid tissues were analyzed and compared across the three patients. Results Comparative analysis of microbial communities in the tonsil and adenoid tissues revealed substantial microbial diversity. At the domain level, bacteria dominated overwhelmingly. In tonsil samples, microbial populations were predominantly ? enriched withFirmicutes (e.g.,Enterococcus)andActinobacteria(e.g.,Mycobacterium tuberculosis), while adenoid samples were dominated by Proteobacteria (e.g.,Pseudomonas syringae) andChlamydiae(e.g.,Chlamydia trachomatis). Alpha diversity analysis demonstrated high species diversity across all samples. Adenoid tissues exhibited significantly higher species richness (ACE/Chao1 indices) compared to tonsil tissues. The Shannon and Simpson indices further confirmed the high microbial diversity in all six samples. Goods_Coverage values indicated adequate sequencing depth. Conclusion The microbial diversity of tonsil and adenoid tissues plays a critical role in maintaining oropharyngeal health, particularly in chronic tonsillitis and adenoid hypertrophy, where microbial composition may influence disease manifestation and therapeutic outcomes. Metagenomic sequencing revealed highly similar dominant bacterial species between tonsil and adenoid tissues, with non-pathogenic species predominating. Chronic inflammation and related factors may alter dominant microbial profiles. Notably, the dominant bacterial communities in tonsils and adenoids exhibited strong similarity.