Abstract:The application of nextgeneration sequencing (NGS) not only enables highthroughput analysis of genetic variation in thyroid carcinoma, but also provides a comprehensive understanding of the biological characteristics of thyroidassociated tumors. NGS provides diagnostic suggestions for fine needle aspiration (FNA) cytology of thyroid nodules with indeterminate characteristics. It can also facilitate patient management by providing risk stratification according to the degree of malignancy. Furthermore, NGS has been applied in cancer research, e.g., molecular tumor classification, molecular prediction of recurrence and metastasis in papillary thyroid carcinoma. This review covers NGS analyses on different types of thyroid cancer tissues, including fresh frozen tissue, FNA tissue, and paraffinembedded tissue. Additionally, this article expounds the significances of NGS in the treatment and experiment research of thyroid carcinoma.